Metadata-Version: 2.1
Name: biosimulators_test_suite
Version: 0.1.13
Summary: Tools for validating that biosimulation tools are consistent with the BioSimulators standards
Home-page: https://github.com/biosimulators/Biosimulators_test_suite
Author: Center for Reproducible Biomedical Modeling
Author-email: info@biosimulators.org
License: MIT
Download-URL: https://github.com/biosimulators/Biosimulators_test_suite
Description: |Latest release| |PyPI| |CI status| |Test coverage|
        
        BioSimulators test suite
        ========================
        
        The BioSimulators test suite is a tool for validating that biosimulation
        software tools implement the `BioSimulators standards for biosimulation
        tools <https://biosimulators.org/standards>`__.
        
        The test suite is composed of two parts:
        
        -  A collection of example modeling projects. Each project is
           represented by a single `COMBINE/OMEX
           archive <https://combinearchive.org/>`__ that contains one or more
           simulation experiments described using the `Simulation Experiment
           Description Markup Language (SED-ML) <https://sed-ml.org>`__ and one
           or more models described using a format such as the `BioNetGen
           Language (BNGL) <https://bionetgen.org>`__ or the `Systems Biology
           Markup Language (SBML) <http://sbml.org>`__.
        
        -  Software for checking that biosimulation tools execute these projects
           according to the BioSimulators standards.
        
           -  Simulation tools support the `BioSimulators standard command-line
              arguments <https://biosimulators.org/standards/simulator-interfaces>`__.
           -  Simulation tools support the `BioSimulators conventions for Docker
              images <https://biosimulators.org/standards/simulator-images>`__.
           -  Simulation tools follow the `BioSimulators conventions for
              executing simulations described by SED-ML files in COMBINE/OMEX
              archives <https://biosimulators.org/standards/simulation-experiments>`__.
           -  Simulation tools support the `BioSimulators conventions for the
              outputs of SED-ML files in COMBINE/OMEX
              archives <https://biosimulators.org/standards/simulation-reports>`__.
        
        Contents
        --------
        
        -  `Installation instructions, tutorial, and API
           documentation <#installation-instructions,-tutorial,-and-API-documentation>`__
        -  `License <#license>`__
        -  `Development team <#development-team>`__
        -  `Contributing to the test suite <#contributing-to-the-test-suite>`__
        -  `Acknowledgements <#acknowledgements>`__
        -  `Questions and comments <#questions-and-comments>`__
        
        Installation instructions, tutorial, and API documentation
        ----------------------------------------------------------
        
        Installation instructions, tutorial, and API documentation are available
        `here <https://biosimulators.github.io/Biosimulators_test_suite/>`__.
        
        License
        -------
        
        The software in this package is released under the `MIT
        License <LICENSE>`__. The modeling projects in this package are released
        under the `Creative Commons 1.0 Universal (CC0)
        license <LICENSE-DATA>`__.
        
        Development team
        ----------------
        
        This package was developed by the `Karr Lab <https://www.karrlab.org>`__
        at the Icahn School of Medicine at Mount Sinai in New York, the
        https://health.uconn.edu/cell-analysis-modeling/ at the University of
        Connecticut, and the `Center for Reproducible Biomedical
        Modeling <http://reproduciblebiomodels.org>`__.
        
        Contributing to the test suite
        ------------------------------
        
        We enthusiastically welcome contributions to the test suite! Please see
        the `guide to contributing <CONTRIBUTING.md>`__ and the `developer's
        code of conduct <CODE_OF_CONDUCT.md>`__.
        
        Acknowledgements
        ----------------
        
        This work was supported by National Institutes of Health award
        P41EB023912.
        
        Questions and comments
        ----------------------
        
        Please contact the `BioSimulators
        Team <mailto:info@biosimulators.org>`__ with any questions or comments.
        
        .. |Latest release| image:: https://img.shields.io/github/v/release/biosimulators/Biosimulators_test_suite
           :target: https://github.com/biosimulators/Biosimulators_test_suite/releases
        .. |PyPI| image:: https://img.shields.io/pypi/v/Biosimulators-test-suite
           :target: https://pypi.org/project/Biosimulators-test-suite/
        .. |CI status| image:: https://github.com/biosimulators/Biosimulators_test_suite/workflows/Continuous%20integration/badge.svg
           :target: https://github.com/biosimulators/Biosimulators_test_suite/actions?query=workflow%3A%22Continuous+integration%22
        .. |Test coverage| image:: https://codecov.io/gh/biosimulators/Biosimulators_test_suite/branch/dev/graph/badge.svg
           :target: https://codecov.io/gh/biosimulators/Biosimulators_test_suite
        
Keywords: systems biology modeling simulation BioSimulators
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Provides-Extra: tests
Provides-Extra: docs
Provides-Extra: all
