LICENSE
README.md
pyproject.toml
setup.py
ark/__init__.py
ark/settings.py
ark/analysis/__init__.py
ark/analysis/dimensionality_reduction.py
ark/analysis/dimensionality_reduction_test.py
ark/analysis/spatial_analysis.py
ark/analysis/spatial_analysis_test.py
ark/analysis/visualize.py
ark/analysis/visualize_test.py
ark/phenotyping/__init__.py
ark/phenotyping/cell_cluster_utils.py
ark/phenotyping/cell_cluster_utils_test.py
ark/phenotyping/pixel_cluster_utils.py
ark/phenotyping/pixel_cluster_utils_test.py
ark/phenotyping/post_cluster_utils.py
ark/phenotyping/post_cluster_utils_test.py
ark/segmentation/__init__.py
ark/segmentation/marker_quantification.py
ark/segmentation/marker_quantification_test.py
ark/segmentation/regionprops_extraction.py
ark/segmentation/regionprops_extraction_test.py
ark/segmentation/signal_extraction.py
ark/segmentation/signal_extraction_test.py
ark/spLDA/__init__.py
ark/spLDA/processing.py
ark/spLDA/processing_test.py
ark/utils/__init__.py
ark/utils/_bootstrapping.c
ark/utils/data_utils.py
ark/utils/data_utils_test.py
ark/utils/deepcell_service_utils.py
ark/utils/deepcell_service_utils_test.py
ark/utils/io_utils.py
ark/utils/io_utils_test.py
ark/utils/load_utils.py
ark/utils/load_utils_test.py
ark/utils/misc_utils.py
ark/utils/misc_utils_test.py
ark/utils/notebook_update_test.py
ark/utils/notebooks_test.py
ark/utils/notebooks_test_utils.py
ark/utils/plot_utils.py
ark/utils/plot_utils_test.py
ark/utils/segmentation_utils.py
ark/utils/segmentation_utils_test.py
ark/utils/spatial_analysis_utils.py
ark/utils/spatial_analysis_utils_test.py
ark/utils/spatial_lda_utils.py
ark/utils/spatial_lda_utils_test.py
ark/utils/synthetic_spatial_datagen.py
ark/utils/synthetic_spatial_datagen_test.py
ark/utils/test_utils.py
ark/utils/tiff_utils.py
ark/utils/tiff_utils_test.py
ark/utils/metacluster_remap_gui/__init__.py
ark/utils/metacluster_remap_gui/colormap_helper.py
ark/utils/metacluster_remap_gui/colormap_helper_test.py
ark/utils/metacluster_remap_gui/conftest.py
ark/utils/metacluster_remap_gui/file_reader.py
ark/utils/metacluster_remap_gui/file_reader_test.py
ark/utils/metacluster_remap_gui/metaclusterdata.py
ark/utils/metacluster_remap_gui/metaclusterdata_test.py
ark/utils/metacluster_remap_gui/metaclustergui.py
ark/utils/metacluster_remap_gui/metaclustergui_test.py
ark/utils/metacluster_remap_gui/throttle.py
ark/utils/metacluster_remap_gui/throttle_test.py
ark/utils/metacluster_remap_gui/zscore_norm.py
ark_analysis.egg-info/PKG-INFO
ark_analysis.egg-info/SOURCES.txt
ark_analysis.egg-info/dependency_links.txt
ark_analysis.egg-info/requires.txt
ark_analysis.egg-info/top_level.txt